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One or more keywords matched the following properties of Koder, Ronald
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overview Work in my laboratory lies at the crossroads of synthetic biology and nanotechnology. Our research projects primarily involve renewable energy production and human health. We use the principles of protein design to create new bioinorganic components, not yet observed in nature, to further extend the possibilities of synthetic biology. These often contain synthetic, non-natural bioinorganic cofactors tailored for their intended purpose. The goal is to fashion protein domains which are clean, modular and ready for assembly into higher order nanostructures with emergent properties. There are a number of related projects underway: 1. Designed proteins for solar energy conversion The development of artificial photosynthesis – i.e. the production of liquid fuels with only sunlight, water, and CO2 – is the Manhattan Project of our age. We are creating self-assembling artificial reaction centers capable of being modularly attached to a variety of catalysts - protein, synthetic chemical catalysts and nanomaterials, in order to catalyze high-energy fuels with light. Projects include: -Creating an artificial reaction center -Creation and optimization of an artificial oxygen evolving protein -Engineering a photosynthetic E.coli -Light-driven biofuel generation – solar driven metabolic pathways on hybrid metamaterials -Single molecule electronics -Self-assembling antireflective biocoatings 2. Designed protein therapeutics. Protein design has advanced to the point where several groups are working on therapeutics. My group has been working on several flavors of therapeutics, in particular battlefield blood substitutes and chemotherapeutics. Projects include: -Designed proteins as optimized oxygen carriers for artificial blood -An artificial nitric oxide dioxygenase as a chemotherapuetic -Safranine-based nitroaromatic prodrug-activating enzymes -Supercharged phase-changing proteins for the detection of cancer
One or more keywords matched the following items that are connected to Koder, Ronald
Item TypeName
Academic Article Design and engineering of an O(2) transport protein.
Academic Article De novo self-assembling collagen heterotrimers using explicit positive and negative design.
Academic Article Design principles for chlorophyll-binding sites in helical proteins.
Academic Article Designing artificial enzymes by intuition and computation.
Academic Article Dynamic factors affecting gaseous ligand binding in an artificial oxygen transport protein.
Academic Article Manipulating cofactor binding thermodynamics in an artificial oxygen transport protein.
Academic Article Rational design of a zinc phthalocyanine binding protein.
Academic Article Fast, cheap and out of control--Insights into thermodynamic and informatic constraints on natural protein sequences from de novo protein design.
Academic Article Order, Disorder, and Temperature-Driven Compaction in a Designed Elastin Protein.
Academic Article Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent Nitroreductase.
Academic Article Designing heterotropically activated allosteric conformational switches using supercharging.
Academic Article Overexpression, isotopic labeling, and spectral characterization of Enterobacter cloacae nitroreductase.
Academic Article Structures of nitroreductase in three states: effects of inhibitor binding and reduction.
Academic Article Hydrophilic to amphiphilic design in redox protein maquettes.
Academic Article The HP-1 maquette: from an apoprotein structure to a structured hemoprotein designed to promote redox-coupled proton exchange.
Academic Article Intelligent design: the de novo engineering of proteins with specified functions.
Academic Article Nativelike structure in designed four alpha-helix bundles driven by buried polar interactions.
Academic Article Geometric constraints for porphyrin binding in helical protein binding sites.
Academic Article Controlling complexity and water penetration in functional de novo protein design.
Concept Protein Binding
Concept Protein Conformation
Concept Protein Engineering
Concept Protein Structure, Secondary
Concept Protein Structure, Tertiary
Concept Protein Folding
Concept Protein Structure, Quaternary
Concept Databases, Protein
Concept Light-Harvesting Protein Complexes
Concept Protein Multimerization
Concept Protein Stability
Academic Article Computational design of a sensitive, selective phase-changing sensor protein for the VX nerve agent.
Academic Article Thermalization of Fluorescent Protein Exciton-Polaritons at Room Temperature.
Academic Article An expandable, modular de novo protein platform for precision redox engineering.
Academic Article Protein dynamics govern the oxyferrous state lifetime of an artificial oxygen transport protein.
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